Back to Blog
statisticsprobabilitydiagnosis

Base Rate Neglect: Why 99% Accuracy is Meaningless

December 5, 2025PaperScores Team

Base Rate Neglect

Imagine a disease that affects 1 in 1,000 people. We have a test that is 99% accurate.

You test positive. What is the chance you have the disease?

Most people say 99%. The answer is 9%.

The Math of False Positives

Let's test 1,000 people.

  • 1 person has the disease. The test catches it (True Positive).
  • 999 people are healthy.
  • The test has a 1% error rate. So 1% of the 999 healthy people will test positive. That is 10 people (False Positives).

So, we have 11 positive results. Only 1 is real.

1 divided by 11 is roughly 9%.

Ignoring the Baseline

This is Base Rate Neglect. We focus on the test accuracy (99%) and ignore the prevalence of the disease (0.1%).

If a disease is rare, even a great test will generate mostly false alarms.

The Terrorist Paradox

This applies to surveillance too.

If you have software that identifies terrorists with 99.9% accuracy, it is useless.

There are very few terrorists. There are millions of innocent people. The software will flag thousands of innocents for every real terrorist.

The Diagnosis

Context matters. A positive test is not a verdict. It is a probability.

Always ask: "How rare is this condition?" If it is a zebra, it is probably just a horse with a stripe painted on it.